Stand: 2. Juni 2007
Tabelle Bayernliga Saison 2006/07
| Platz | Mannschaften | Sp | S | U | N | Tore | Diff | Pkt |
|---|---|---|---|---|---|---|---|---|
| 1 | Jahn Regensburg | 36 | 23 | 8 | 5 | 84:38 | 46 | 77 |
| 2 | SpVgg Greuther Fürth II | 36 | 19 | 8 | 9 | 60:31 | 29 | 65 |
| 3 | SpVgg Bayreuth | 36 | 19 | 8 | 9 | 62:39 | 23 | 65 |
| 4 | FC Memmingen | 36 | 18 | 9 | 9 | 58:34 | 24 | 63 |
| 5 | 1. FC Eintracht Bamberg | 36 | 18 | 9 | 9 | 64:51 | 13 | 63 |
| 6 | 1. FC Nürnberg II | 36 | 18 | 8 | 10 | 56:41 | 15 | 62 |
| 7 | TSV Aindling | 36 | 19 | 5 | 12 | 52:38 | 14 | 62 |
| 8 | SpVgg Weiden | 36 | 17 | 9 | 10 | 47:45 | 2 | 60 |
| 9 | Würzburger FV | 36 | 14 | 7 | 15 | 50:51 | -1 | 49 |
| 10 | SV Heimstetten | 36 | 13 | 9 | 14 | 56:57 | -1 | 48 |
| 11 | 1. FC Bad Kötzting | 36 | 12 | 11 | 13 | 58:57 | 1 | 47 |
| 12 | SpVgg Bayern Hof | 36 | 13 | 8 | 15 | 54:57 | -3 | 47 |
| 13 | SpVgg Unterhaching II | 36 | 12 | 10 | 14 | 44:37 | 7 | 46 |
| 14 | FC Ismaning | 36 | 11 | 12 | 13 | 44:52 | -8 | 45 |
| 15 | TSV Großbardorf | 36 | 11 | 9 | 16 | 51:70 | -19 | 42 |
| 16 | VfL Frohnlach | 36 | 11 | 6 | 19 | 43:59 | -16 | 39 |
| 17 | SC Fürstenfeldbruck | 36 | 6 | 8 | 22 | 46:78 | -32 | 26 |
| 18 | Wacker Burghausen II | 36 | 5 | 7 | 24 | 42:92 | -50 | 22 |
| 19 | 1. SC Feucht | 36 | 6 | 3 | 27 | 46:90 | -44 | 21 |