| Pl. | Verein | Spiele | S | U | N | Tore | Diff | Punkte | |
|---|---|---|---|---|---|---|---|---|---|
| 1. (1) |  |
SC Freiburg | 34 | 21 | 5 | 8 | 60:36 | 24 | 68 |
| 2. (2) |  |
1. FSV Mainz 05 | 34 | 18 | 9 | 7 | 62:37 | 25 | 63 |
| 3. (3) |  |
1. FC Nürnberg | 34 | 16 | 12 | 6 | 51:29 | 22 | 60 |
| 4. (4) |  |
Alemannia Aachen | 34 | 16 | 8 | 10 | 58:38 | 20 | 56 |
| 5. (5) |  |
SpVgg Greuther Fürth | 34 | 16 | 8 | 10 | 60:46 | 14 | 56 |
| 6. (6) |  |
MSV Duisburg | 34 | 14 | 13 | 7 | 56:36 | 20 | 55 |
| 7. (7) |  |
1. FC Kaiserslautern | 34 | 15 | 7 | 12 | 53:48 | 5 | 52 |
| 8. (8) |  |
FC St. Pauli | 34 | 14 | 6 | 14 | 52:59 | -7 | 48 |
| 9. (9) |  |
Rot-Weiß Oberhausen | 34 | 11 | 9 | 14 | 35:54 | -19 | 42 |
| 10. (10) |  |
Rot Weiss Ahlen | 34 | 11 | 8 | 15 | 38:57 | -19 | 41 |
| 11. (11) |  |
FC Augsburg | 34 | 10 | 10 | 14 | 43:46 | -3 | 40 |
| 12. (12) |  |
TSV 1860 München | 34 | 9 | 12 | 13 | 44:46 | -2 | 39 |
| 13. (15) |  |
Hansa Rostock | 34 | 8 | 14 | 12 | 52:53 | -1 | 38 |
| 14. (13) |  |
TuS Koblenz * | 34 | 11 | 8 | 15 | 47:57 | -10 | 38 |
| 15. (14) |  |
FSV Frankfurt | 34 | 9 | 11 | 14 | 34:47 | -13 | 38 |
| 16. (16) |  |
VfL Osnabrück | 34 | 8 | 12 | 14 | 41:60 | -19 | 36 |
| 17. (17) |  |
FC Ingolstadt 04 | 34 | 7 | 10 | 17 | 38:54 | -16 | 31 |
| 18. (18) |  |
SV Wehen Wiesbaden | 34 | 5 | 12 | 17 | 28:49 | -21 | 27 |
www.fcn.de/saison/2008-2009/tabelle/gesamttabelle/
Hinweise
* -3 Punkte; Verstöße gegen Lizenzierungsauflagen